On cherche à étudier l’effet de trois facteurs sur le transcriptome des racines d’Arabidopsis thaliana. Le CO2, au cours des études préliminaires, s’est montré peu influent en conditions contrôles de fer et de nitrates, et accentué en cas de stress nutritionnel. Nous reprennons ces résultats avec des fonctions génériques et propres pour en faire le résumé et de jolis graphes.

Import des données : matrice d’expression

On a, pour chaque gène et chaque condition, son niveau d’expression en sortie de quantification. On labelle les conditions avec le code suivant : lettre majuscule pour le niveau fort, minuscule pour le niveau faible. Le réplicat est donné après l’underscore.

[1] "cnF_3"
[1] At_AmbientCO2_LowNitrate_Fe1
48 Levels: At_AmbientCO2_HighNitrate_Fe1 ... Sl_ElevatedCO2_LowNitrate_FeStarvation3
[1] "At_AmbientCO2_LowNitrate_Fe"
          cNF_3 cNF_2 cNF_1 cnF_2 cnF_1 cnF_3 CNF_1 CnF_2 CnF_1 CnF_3 cNf_1
AT1G01010  1526  1006  1116  1275   967  1018   854  1132  1294  1364  2325
AT1G01020   416   285   289   349   364   370   226   513   502   561   461
AT1G01030    31    15    19    29    36    28    12    47    34    47    18
          cnf_2 cnf_1 cNf_2 cNf_3 cnf_3 Cnf_3 CNf_1 Cnf_1 Cnf_2 CNf_3 CNf_2
AT1G01010  2113  2193  2564  2364  2074  1987  2027  1754  1697  1537  1898
AT1G01020   407   432   614   380   502   484   467   426   415   413   462
AT1G01030    40    32    44    37    27    42    39    36    40    37    37
          CNF_3 CNF_2
AT1G01010   816   912
AT1G01020   223   312
AT1G01030    15    19
 [ reached 'max' / getOption("max.print") -- omitted 3 rows ]
[1] 23342    24
 [1] "cNF_3" "cNF_2" "cNF_1" "cnF_2" "cnF_1" "cnF_3" "CNF_1" "CnF_2" "CnF_1"
[10] "CnF_3" "cNf_1" "cnf_2" "cnf_1" "cNf_2" "cNf_3" "cnf_3" "Cnf_3" "CNf_1"
[19] "Cnf_1" "Cnf_2" "CNf_3" "CNf_2" "CNF_3" "CNF_2"
    cNF_3     cNF_2     cNF_1     cnF_2     cnF_1     cnF_3     CNF_1     CnF_2 
1404.4841 1137.1461 1370.4972 1234.5941  975.1056 1079.3725 1464.9136 1068.1962 
    CnF_1     CnF_3     cNf_1     cnf_2     cnf_1     cNf_2     cNf_3     cnf_3 
1184.6501 1186.8721 2176.3477 2035.5245 1879.4058 2023.3233 2118.1681 1941.6821 
    Cnf_3     CNf_1     Cnf_1     Cnf_2     CNf_3     CNf_2     CNF_3     CNF_2 
1766.0503 1878.6843 1666.8990 1566.9834 1652.5818 1823.3202 1342.1000 1267.1018 

Effet nitrate en conditions contrôle

On définit les conditions contrôle comme suit : CO2 ambiant et fort fer.

  (Intercept) groupcnF
1           1        0
2           1        0
3           1        0
4           1        1
5           1        1
6           1        1
attr(,"assign")
[1] 0 1
attr(,"contrasts")
attr(,"contrasts")$group
[1] "contr.treatment"

[1] "cNF_3" "cNF_2" "cNF_1" "cnF_2" "cnF_1" "cnF_3"
    cNF_3     cNF_2     cNF_1     cnF_2     cnF_1     cnF_3 
0.9859482 0.9865531 0.9545113 1.0150637 1.0299591 1.0279646 

[1] "2803  genes DE"

Fort CO2

  (Intercept) groupCnF
1           1        0
2           1        0
3           1        0
4           1        1
5           1        1
6           1        1
attr(,"assign")
[1] 0 1
attr(,"contrasts")
attr(,"contrasts")$group
[1] "contr.treatment"

[1] "CNF_1" "CNF_3" "CNF_2" "CnF_2" "CnF_1" "CnF_3"
    CNF_1     CNF_3     CNF_2     CnF_2     CnF_1     CnF_3 
0.9793780 0.9377198 0.9911882 1.0424709 1.0209230 1.0283201 

[1] "1811  genes DE"

Low iron

  (Intercept) groupcnf
1           1        0
2           1        0
3           1        0
4           1        1
5           1        1
6           1        1
attr(,"assign")
[1] 0 1
attr(,"contrasts")
attr(,"contrasts")$group
[1] "contr.treatment"

[1] "cNf_1" "cNf_2" "cNf_3" "cnf_2" "cnf_1" "cnf_3"
    cNf_1     cNf_2     cNf_3     cnf_2     cnf_1     cnf_3 
0.9927341 1.0205843 0.9891514 0.9943126 1.0031887 1.0000289 

[1] "5356  genes DE"

Low iron and high CO2

  (Intercept) groupCnf
1           1        0
2           1        0
3           1        0
4           1        1
5           1        1
6           1        1
attr(,"assign")
[1] 0 1
attr(,"contrasts")
attr(,"contrasts")$group
[1] "contr.treatment"

[1] "CNf_1" "CNf_3" "CNf_2" "Cnf_3" "Cnf_1" "Cnf_2"
    CNf_1     CNf_3     CNf_2     Cnf_3     Cnf_1     Cnf_2 
1.0043575 1.0334462 1.0275269 0.9519021 0.9851404 0.9976269 

[1] "2673  genes DE"

Venn diagram

On visualise les gènes différentiellement exprimés en commun entre les différents niveaux des autres facteurs.

    gene_id   a.value   m.value       p.value       q.value rank estimatedDEG
1 AT1G29100  7.527717 -3.844547 3.578192e-138 8.352216e-134    1            1
2 AT1G19250  8.839658 -3.648727 1.878457e-127 2.192347e-123    2            1
3 AT2G13810  8.469376 -4.131913 1.462868e-124 1.138209e-120    3            1
4 AT5G33355  6.962703 -5.152094 8.806368e-116 5.138956e-112    4            1
5 AT4G21680  7.657504 -3.886983 1.141541e-114 5.329171e-111    5            1
6 AT4G26050 10.258910 -2.260091  1.152467e-95  4.483480e-92    6            1
7 AT2G41810  7.414076 -4.047054  8.398511e-92  2.800544e-88    7            1
8 AT4G22640  9.630374 -1.975045  1.839254e-80  5.366485e-77    8            1
9 AT4G25100  9.022566 -2.067878  7.469292e-71  1.937202e-67    9            1
  upreg
1     0
2     0
3     0
4     0
5     0
6     0
7     0
8     0
9     0
 [ reached 'max' / getOption("max.print") -- omitted 2794 rows ]
    gene_id  a.value   m.value       p.value       q.value rank estimatedDEG
1 AT2G41810 6.909960 -4.891457 5.753358e-166 1.342949e-161    1            1
2 AT4G21680 7.158203 -3.903113 1.079396e-127 1.259763e-123    2            1
3 AT5G33355 7.532822 -3.942011  1.137090e-79  8.847318e-76    3            1
4 AT4G26050 9.901752 -2.410582  3.640522e-76  2.124427e-72    4            1
5 AT2G43890 4.534486 -4.585951  5.500546e-52  2.567875e-48    5            1
6 AT4G13420 7.045056  3.418569  6.910049e-50  2.688239e-46    6            1
7 AT4G11393 2.688467 -6.030749  5.311806e-40  1.771260e-36    7            1
8 AT3G45060 3.835388 -4.139280  1.476109e-35  4.306917e-32    8            1
9 AT1G51840 8.737173  1.711245  6.237559e-35  1.617746e-31    9            1
  upreg
1     0
2     0
3     0
4     0
5     0
6     1
7     0
8     0
9     1
 [ reached 'max' / getOption("max.print") -- omitted 1802 rows ]
    gene_id   a.value   m.value       p.value       q.value rank estimatedDEG
1 AT1G08100  8.250556  7.543363 1.061212e-240 2.477082e-236    1            1
2 AT4G19680  7.581300 -5.390613 1.732236e-215 2.021692e-211    2            1
3 AT4G31970 10.071433  4.120985 6.675358e-196 5.193874e-192    3            1
4 AT4G13250 10.098952  3.612679 1.457726e-189 8.506561e-186    4            1
5 AT1G60050  9.440827  5.561353 2.298538e-189 1.073050e-185    5            1
6 AT4G01390  8.024264  5.780911 9.500326e-178 3.695943e-174    6            1
7 AT1G26390  9.011257  3.803360 1.268011e-153 4.228272e-150    7            1
8 AT1G60470  9.278972  3.398056 1.922528e-150 5.609457e-147    8            1
9 AT1G52070  6.816105 -6.878196 7.952279e-147 2.062468e-143    9            1
  upreg
1     1
2     0
3     1
4     1
5     1
6     1
7     1
8     1
9     0
 [ reached 'max' / getOption("max.print") -- omitted 5347 rows ]
    gene_id   a.value   m.value       p.value       q.value rank estimatedDEG
1 AT5G37990  8.804797  4.793179 1.242358e-182 2.899912e-178    1            1
2 AT3G55970  6.219576  5.310631  9.095523e-97  1.061538e-92    2            1
3 AT2G43510  9.062836  3.025254  2.217784e-86  1.725584e-82    3            1
4 AT4G21680 11.255880 -2.409529  8.268693e-85  4.825196e-81    4            1
5 AT1G32350  7.026600  3.559752  4.914056e-73  2.294078e-69    5            1
6 AT3G45060  9.354052 -2.056677  4.116341e-69  1.601394e-65    6            1
7 AT1G26390  9.590338  2.992967  4.952257e-68  1.651365e-64    7            1
8 AT2G29460  9.917335  1.860758  3.822791e-66  1.115395e-62    8            1
9 AT1G52890  8.325089  3.151416  1.724274e-65  4.472000e-62    9            1
  upreg
1     1
2     1
3     1
4     0
5     1
6     0
7     1
8     1
9     1
 [ reached 'max' / getOption("max.print") -- omitted 2664 rows ]

ensembl_gene_id description external_gene_name entrezgene_id
AT1G01560 Mitogen-activated protein kinase 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9LMM5] MPK11 839523
AT1G01580 ferric reduction oxidase 2 [Source:TAIR;Acc:AT1G01580] FRO2 839411
AT1G02920 Glutathione S-transferase F7 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRY5] GSTF7 839295
AT1G02930 Glutathione S-transferase F6 [Source:UniProtKB/Swiss-Prot;Acc:P42760] GSTF6 839515
AT1G05010 1-aminocyclopropane-1-carboxylate oxidase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q06588] ACO4 839345
AT1G08050 T6D22.13 [Source:UniProtKB/TrEMBL;Acc:Q9LN03] 837321
AT1G10550 Probable xyloglucan endotransglucosylase/hydrolase protein 33 [Source:UniProtKB/Swiss-Prot;Acc:Q8LC45] XTH33 837596
AT1G13490 F13B4.1 protein [Source:UniProtKB/TrEMBL;Acc:Q9FZ74] 837909
AT1G14260 At1g14260 [Source:UniProtKB/TrEMBL;Acc:Q4PS45] 837987
AT1G14520 myo-inositol oxygenase 1 [Source:TAIR;Acc:AT1G14520] MIOX1 838014
AT1G14880 Protein PLANT CADMIUM RESISTANCE 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQU2] PCR1 838053
AT1G15010 Mediator of RNA polymerase II transcription subunit [Source:UniProtKB/TrEMBL;Acc:Q8LCU9] 838066
AT1G16160 WAKL5 [Source:UniProtKB/TrEMBL;Acc:A0A178W9G0] WAKL5 838185
AT1G16670 Cold-responsive protein kinase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q93YN1] CRPK1 838236
AT1G18970 Germin-like protein subfamily T member 1 [Source:UniProtKB/Swiss-Prot;Acc:P92995] GLP1 838478
AT1G19020 CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase [Source:UniProtKB/TrEMBL;Acc:Q8VYY6] 838483
AT1G19250 Probable flavin-containing monooxygenase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LMA1] FMO1 838508
AT1G20190 Expansin-A11 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNU3] EXPA11 838608
AT1G21110 Indole glucosinolate O-methyltransferase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPU6] IGMT3 838707
AT1G21120 O-methyltransferase family protein [Source:TAIR;Acc:AT1G21120] 838708
AT1G21130 Indole glucosinolate O-methyltransferase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPU8] IGMT4 838709
AT1G24620 Probable calcium-binding protein CML25 [Source:UniProtKB/Swiss-Prot;Acc:Q9FYK2] CML25 839076
AT1G26380 Berberine bridge enzyme-like 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FZC4] FOX1 839180
AT1G26390 Berberine bridge enzyme-like 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FZC5] FOX2 839181
AT1G26420 Berberine bridge enzyme-like 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9FZC8] FOX5 839184
AT1G27730 Zinc finger protein ZAT10 [Source:UniProtKB/Swiss-Prot;Acc:Q96289] ZAT10 839666
AT1G28370 ERF domain protein 11 [Source:TAIR;Acc:AT1G28370] ERF11 839733
AT1G29025 Calcium-binding EF-hand family protein [Source:UniProtKB/TrEMBL;Acc:F4HZU9] 10723075
AT1G29640 At1g29640 [Source:UniProtKB/TrEMBL;Acc:Q9C7N7] 839841
AT1G30560 G3Pp3 [Source:UniProtKB/TrEMBL;Acc:A0A178WI18] 839936
AT1G30700 Berberine bridge enzyme-like 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9SA85] 839950
AT1G33890 Immune-associated nucleotide-binding protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8U6] IAN3 840286
AT1G45145 Thioredoxin H5 [Source:UniProtKB/Swiss-Prot;Acc:Q39241] TRX5 841082
AT1G47395 At1g47390 [Source:UniProtKB/TrEMBL;Acc:Q8GUL3] 841143
AT1G47400 unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G47395.1); Ha. [Source:TAIR;Acc:AT1G47400] 841144
AT1G47560 Exocyst complex component SEC3B [Source:UniProtKB/Swiss-Prot;Acc:Q9SX86] SEC3B 841165
AT1G49000 At1g49000 [Source:UniProtKB/TrEMBL;Acc:Q9M9A2] 841322
AT1G49240 Actin-8 [Source:UniProtKB/Swiss-Prot;Acc:Q96293] ACT8 841347
AT1G50060 CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LPM7] 841430
AT1G53625 At1g53625 [Source:UniProtKB/TrEMBL;Acc:Q9LPH9] 841798
AT1G53950 F15I1.4 protein [Source:UniProtKB/TrEMBL;Acc:Q9SYF2] 28717351
AT1G55110 Protein indeterminate-domain 7 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1F5] IDD7 841954
AT1G56430 Probable nicotianamine synthase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9C7X5] NAS4 842096
AT1G57630 Disease resistance protein RPP1-WsB, putative [Source:UniProtKB/TrEMBL;Acc:Q9FVT9] 842139
AT1G57990 PUP18 [Source:UniProtKB/TrEMBL;Acc:A0A178WC51] PUP18 842166
AT1G58300 Heme oxygenase 4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LQC0] HO4 842199
AT1G58320 Protein PLANT CADMIUM RESISTANCE 9 [Source:UniProtKB/Swiss-Prot;Acc:P0CW98] PCR9 842201
AT1G60750 Probable aldo-keto reductase 6 [Source:UniProtKB/Swiss-Prot;Acc:F4HPY8] 3767587
AT1G61080 Hydroxyproline-rich glycoprotein family protein [Source:TAIR;Acc:AT1G61080] 842400
AT1G62280 SLAH1 [Source:UniProtKB/TrEMBL;Acc:A0A178W8P4] SLAH1 842525
AT1G62660 Acid beta-fructofuranosidase 3, vacuolar [Source:UniProtKB/Swiss-Prot;Acc:Q43348] BFRUCT3 842563
AT1G63550 Cysteine-rich repeat secretory protein 9 [Source:UniProtKB/Swiss-Prot;Acc:Q5Q0E2] CRRSP9 842660
AT1G64370 Filaggrin-like protein [Source:UniProtKB/TrEMBL;Acc:Q9C7W1] 842744
AT1G65486 unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G65490.1); Ha. [Source:TAIR;Acc:AT1G65486] 6240283
AT1G65845 At1g65844 [Source:UniProtKB/TrEMBL;Acc:Q9SHX3] 842895
AT1G66780 Protein DETOXIFICATION [Source:UniProtKB/TrEMBL;Acc:A0A178W985] DTX8 842996
AT1G67000 LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.8 [Source:UniProtKB/Swiss-Prot;Acc:Q3ECH2] LRK10L-2.8 843018
AT1G70110 Putative L-type lectin-domain containing receptor kinase V.1 [Source:UniProtKB/Swiss-Prot;Acc:O04534] LECRK51 843347
AT1G70170 Metalloendoproteinase 2-MMP [Source:UniProtKB/Swiss-Prot;Acc:O04529] 2MMP 843353
AT1G70260 WAT1-related protein At1g70260 [Source:UniProtKB/Swiss-Prot;Acc:F4I5D5] 843362
AT1G70690 PDLP5 [Source:UniProtKB/TrEMBL;Acc:A0A178WPB2] CRRSP2 843406
AT1G72430 Auxin-responsive protein SAUR78 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9E1] SAUR78 843575
AT1G73500 Mitogen-activated protein kinase kinase 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9FX43] MKK9 843685
AT1G74710 ADC synthase superfamily protein [Source:TAIR;Acc:AT1G74710] EDS16 843810
AT1G75750 GASA1 [Source:UniProtKB/TrEMBL;Acc:A0A178W4S5] GASA1 843908
AT1G76220 T23E18.15 [Source:UniProtKB/TrEMBL;Acc:Q9SGR2] 843955
AT1G76520 Protein PIN-LIKES 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9K5] PILS3 843985
AT1G77520 O-methyltransferase family protein [Source:UniProtKB/TrEMBL;Acc:Q9CAQ4] 844088
AT1G80240 At1g80240 [Source:UniProtKB/TrEMBL;Acc:Q9SSB7] 844364
AT2G02120 Defensin-like protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q41914] PDF2.1 814743
AT2G15220 At2g15220/F15A23.4 [Source:UniProtKB/TrEMBL;Acc:Q9SKL6] 816011
AT2G15880 Pollen-specific leucine-rich repeat extensin-like protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9XIL9] PEX3 816084
AT2G16660 At2g16660/T24I21.7 [Source:UniProtKB/TrEMBL;Acc:Q9SLF1] 816167
AT2G18690 Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9ZV49] 816384
AT2G19060 GDSL esterase/lipase At2g19060 [Source:UniProtKB/Swiss-Prot;Acc:O64469] 816423
AT2G19970 At2g19970 [Source:UniProtKB/TrEMBL;Acc:Q9SL83] 816516
AT2G19990 PR-1-like protein [Source:UniProtKB/TrEMBL;Acc:A0A178VRT6] PR-1-LIKE 816518
AT2G20520 Fasciclin-like arabinogalactan protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9SIL7] FLA6 816574
AT2G22500 Mitochondrial uncoupling protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJY5] PUMP5 816783
AT2G23620 Methylesterase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8S8S9] MES1 816894
AT2G25460 CONTAINS InterPro DOMAIN/s: C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G04860.1); Ha. [Source:TAIR;Acc:AT2G25460] 817084
AT2G26400 acireductone dioxygenase 3 [Source:TAIR;Acc:AT2G26400] ARD 817180
AT2G26530 AR781 [Source:UniProtKB/TrEMBL;Acc:A0A178VPT1] AR781 817194
AT2G26560 Patatin-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:O48723] PLP2 817197
AT2G29480 Glutathione S-transferase U2 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZW29] GSTU2 817497
AT2G30550 Phospholipase A1-Igamma2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q3EBR6] 817604
AT2G32620 Cellulose synthase-like protein B2 [Source:UniProtKB/Swiss-Prot;Acc:O80899] CSLB2 817822
AT2G36110 Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SIH3] 818184
AT2G36260 Iron-sulfur assembly protein IscA-like 3, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8L8C0] 818198
AT2G37780 Cysteine/Histidine-rich C1 domain family protein [Source:UniProtKB/TrEMBL;Acc:F4IR19] 818355
AT2G37810 Cysteine/Histidine-rich C1 domain family protein [Source:UniProtKB/TrEMBL;Acc:Q4PSR5] 818358
AT2G38320 Protein trichome birefringence-like 34 [Source:UniProtKB/Swiss-Prot;Acc:O80919] TBL34 818412
AT2G38490 CBL-interacting serine/threonine-protein kinase 22 [Source:UniProtKB/Swiss-Prot;Acc:O80902] CIPK22 818431
AT2G38500 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8GY13] 818432
AT2G39200 MLO-like protein [Source:UniProtKB/TrEMBL;Acc:A0A178VNS1] MLO12 818505
AT2G41240 BHLH100 [Source:UniProtKB/TrEMBL;Acc:A0A384LFW4] BHLH100 818723
AT2G41380 At2g41380 [Source:UniProtKB/TrEMBL;Acc:Q9ZVC3] 818736
AT2G41810 Uncharacterized protein At2g41810 [Source:UniProtKB/TrEMBL;Acc:O22939] 818780
AT2G42850 CYP718 [Source:UniProtKB/TrEMBL;Acc:A0A178VUF2] CYP718 818885
AT2G45360 Ankyrin repeat/KH domain protein (DUF1442) [Source:UniProtKB/TrEMBL;Acc:O22136] 819144
AT3G01420 Alpha-dioxygenase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SGH6] DOX1 821135
AT3G02850 SKOR [Source:UniProtKB/TrEMBL;Acc:A0A178VHK5] SKOR 821052
AT3G03500 T21P5.8 protein [Source:UniProtKB/TrEMBL;Acc:Q9SRQ4] 821247
AT3G05155 Major facilitator superfamily protein [Source:TAIR;Acc:AT3G05155] 819678
AT3G07460 Protein of unknown function, DUF538 [Source:TAIR;Acc:AT3G07460] 819934
AT3G07720 AT3g07720/F17A17_6 [Source:UniProtKB/TrEMBL;Acc:Q9S7W4] 819963
AT3G09220 Laccase-7 [Source:UniProtKB/Swiss-Prot;Acc:Q9SR40] LAC7 820078
AT3G11370 Cysteine/Histidine-rich C1 domain family protein [Source:UniProtKB/TrEMBL;Acc:Q9CAY7] 820309
AT3G12230 Serine carboxypeptidase-like 14 [Source:UniProtKB/Swiss-Prot;Acc:Q9C7D3] SCPL14 820403
AT3G12820 Transcription factor MYB10 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTV4] AtMYB10 820464
AT3G12900 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LE86] 820473
AT3G13950 AT3G13950 protein [Source:UniProtKB/TrEMBL;Acc:B9DG91] 820608
AT3G14990 Protein DJ-1 homolog A [Source:UniProtKB/Swiss-Prot;Acc:Q9FPF0] DJ1A 820728
AT3G16390 Nitrile-specifier protein 3 [Source:UniProtKB/Swiss-Prot;Acc:O04318] NSP3 820886
AT3G18560 AT3g18560/K24M9_5 [Source:UniProtKB/TrEMBL;Acc:Q9LII3] 821387
AT3G19430 Late embryogenesis abundant protein-related / LEA protein-like protein [Source:UniProtKB/TrEMBL;Acc:A0A178VGJ3] 821477
AT3G19580 ZF2 [Source:UniProtKB/TrEMBL;Acc:A0A178VJ97] AZF2 821495
AT3G21560 UGT84A2 [Source:UniProtKB/TrEMBL;Acc:A0A384L2P1] UGT84A2 821710
AT3G22120 Cell wall-plasma membrane linker protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LSA3] CWLP 821775
AT3G22840 ELIP1 [Source:UniProtKB/TrEMBL;Acc:A0A178VCA8] ELIP1 821855
AT3G25730 AP2/ERF and B3 domain-containing transcription factor ARF14 [Source:UniProtKB/Swiss-Prot;Acc:Q9LS06] ARF14 822164
AT3G28510 AAA-ATPase At3g28510 [Source:UniProtKB/Swiss-Prot;Acc:Q9LH84] 822481
AT3G29250 Short-chain dehydrogenase reductase 4 [Source:UniProtKB/Swiss-Prot;Acc:F4J2Z7] SDR4 822580
AT3G45650 Nitrate excretion transporter1 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LSG9] NAXT1 823707
AT3G46340 Putative receptor-like protein kinase At3g46340 [Source:UniProtKB/Swiss-Prot;Acc:Q9SNA3] 823779
AT3G47420 Putative glycerol-3-phosphate transporter 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C5L3] ATPS3 823896
AT3G48520 CYP94B3 [Source:UniProtKB/TrEMBL;Acc:A0A178V8H3] CYP94B3 824011
AT3G48850 Mitochondrial phosphate carrier protein 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9M2Z8] MPT2 824046
AT3G49845 WIH3 [Source:UniProtKB/TrEMBL;Acc:A0A384LFL0] 6240705
AT3G50660 Cytochrome P450 90B1 [Source:UniProtKB/Swiss-Prot;Acc:O64989] CYP90B1 824229
AT3G53150 UDP-glucosyl transferase 73D1 [Source:TAIR;Acc:AT3G53150] UGT73D1 NA
AT3G53590 Leucine-rich repeat protein kinase family protein [Source:TAIR;Acc:AT3G53590] NA
AT3G53600 At3g53600 [Source:UniProtKB/TrEMBL;Acc:Q9LFG0] 824528
AT3G55470 At3g55470 [Source:UniProtKB/TrEMBL;Acc:Q9M2T2] 824713
AT3G55740 Proline transporter 2 [Source:UniProtKB/Swiss-Prot;Acc:P92962] PROT2 824740
AT3G55790 Transmembrane protein [Source:UniProtKB/TrEMBL;Acc:Q9M045] 824745
AT3G56970 Transcription factor ORG2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M1K1] ORG2 824864
AT3G56980 Transcription factor ORG3 [Source:UniProtKB/Swiss-Prot;Acc:Q9M1K0] ORG3 824865
AT3G59080 AT3g59080/F17J16_130 [Source:UniProtKB/TrEMBL;Acc:Q9LYS8] 825077
AT3G59350 Protein kinase superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LM53] 825104
AT3G59930 Defensin-like protein 206 [Source:UniProtKB/Swiss-Prot;Acc:Q94JR6] 825163
AT3G63380 Calcium-transporting ATPase [Source:UniProtKB/TrEMBL;Acc:A0A178VEV7] ACA12 825513
AT4G00910 Aluminium activated malate transporter family protein [Source:TAIR;Acc:AT4G00910] 827985
AT4G01390 TRAF-like family protein [Source:UniProtKB/TrEMBL;Acc:F4JI18] 828075
AT4G01630 Expansin [Source:UniProtKB/TrEMBL;Acc:A0A178UWZ2] EXPA17 827983
AT4G04570 Cysteine-rich receptor-like protein kinase 40 [Source:UniProtKB/Swiss-Prot;Acc:Q9SYS3] CRK40 825789
AT4G08380 Extensin-like protein [Source:UniProtKB/TrEMBL;Acc:Q9STN0] 826395
AT4G08570 Heavy metal-associated isoprenylated plant protein 24 [Source:UniProtKB/Swiss-Prot;Acc:O81464] HIPP24 826418
AT4G10500 Protein DMR6-LIKE OXYGENASE 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZSA8] DLO1 826642
AT4G10530 Subtilase family protein [Source:TAIR;Acc:AT4G10530] NA
AT4G10540 Subtilisin-like protease SBT3.8 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZY3] SBT3.8 826646
AT4G11393 Putative defensin-like protein 202 [Source:UniProtKB/Swiss-Prot;Acc:Q2V3J6] 3770126
AT4G12545 Putative lipid-binding protein AIR1B [Source:UniProtKB/Swiss-Prot;Acc:Q9ZSP6] AIR1B 826867
AT4G12550 Putative lipid-binding protein AIR1 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7I2] AIR1 826868
AT4G13420 Potassium transporter [Source:UniProtKB/TrEMBL;Acc:Q53XI1] POT5 826973
AT4G14280 ARM repeat superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q1PE83] 827069
AT4G15370 Baruol synthase [Source:UniProtKB/Swiss-Prot;Acc:O23390] BARS1 827203
AT4G15760 monooxygenase 1 [Source:TAIR;Acc:AT4G15760] MO1 827255
AT4G16370 oligopeptide transporter [Source:TAIR;Acc:AT4G16370] ATOPT3 NA
AT4G18510 CLE2 [Source:UniProtKB/TrEMBL;Acc:A0A178UVM8] CLE2 827583
AT4G19720 Glycosyl hydrolase family protein with chitinase insertion domain [Source:TAIR;Acc:AT4G19720] 827716
AT4G21680 Protein NRT1/ PTR FAMILY 7.2 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXN2] NPF7.2 828255
AT4G22460 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SUX3] 828341
AT4G22640 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein [Source:UniProtKB/TrEMBL;Acc:O49645] 828360
AT4G23190 Cysteine-rich receptor-like protein kinase 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZP16] CRK11 828418
AT4G23550 WRKY29 [Source:UniProtKB/TrEMBL;Acc:A0A178V2E9] WRKY29 828455
AT4G23700 Cation/H(+) antiporter 17 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUQ7] CHX17 828470
AT4G25090 Putative respiratory burst oxidase homolog protein G [Source:UniProtKB/Swiss-Prot;Acc:Q9SW17] RBOHG 828612
AT4G25100 Superoxide dismutase [Fe] 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P21276] FSD1 828613
AT4G25820 Xyloglucan endotransglucosylase/hydrolase [Source:UniProtKB/TrEMBL;Acc:A0A178UTG4] XTH14 828687
AT4G26050 Plant intracellular Ras-group-related LRR protein 8 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWE5] PIRL8 828711
AT4G30110 Cadmium/zinc-transporting ATPase HMA2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZW4] HMA2 829134
AT4G31330 Uncharacterized protein At4g31330 [Source:UniProtKB/TrEMBL;Acc:Q9C5C1] 829260
AT4G33050 calmodulin-binding family protein [Source:TAIR;Acc:AT4G33050] EDA39 829442
AT4G33880 Transcription factor bHLH85 [Source:UniProtKB/Swiss-Prot;Acc:Q84WK0] BHLH85 829531
AT4G34135 UDP-glucosyl transferase 73B2 [Source:UniProtKB/Swiss-Prot;Acc:Q94C57] UGT73B2 829560
AT4G37060 PATATIN-like protein 5 [Source:TAIR;Acc:AT4G37060] PLP5 829860
AT4G37220 Cold-regulated 413 plasma membrane protein 4 [Source:UniProtKB/Swiss-Prot;Acc:O23164] 829876
AT4G37390 Auxin-responsive GH3 family protein [Source:TAIR;Acc:AT4G37390] YDK1 NA
AT4G38970 Fructose-bisphosphate aldolase [Source:UniProtKB/TrEMBL;Acc:A0A178UW98] FBA2 830052
AT4G39950 cytochrome P450, family 79, subfamily B, polypeptide 2 [Source:TAIR;Acc:AT4G39950] CYP79B2 830154
AT5G01550 lectin receptor kinase a4.1 [Source:TAIR;Acc:AT5G01550] LECRKA4.2 831700
AT5G02230 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein [Source:TAIR;Acc:AT5G02230] 831784
AT5G02490 Probable mediator of RNA polymerase II transcription subunit 37c [Source:UniProtKB/Swiss-Prot;Acc:P22954] MED37D 831856
AT5G02780 Glutathione S-transferase L1 [Source:UniProtKB/Swiss-Prot;Acc:Q6NLB0] GSTL1 831800
AT5G03545 At5g03545 [Source:UniProtKB/TrEMBL;Acc:Q9LZD2] AT4 831795
AT5G04150 basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Source:TAIR;Acc:AT5G04150] BHLH101 830293
AT5G07760 formin homology 2 domain-containing protein / FH2 domain-containing protein [Source:TAIR;Acc:AT5G07760] 830669
AT5G09978 Elicitor peptide 7 [Source:UniProtKB/Swiss-Prot;Acc:P0C1T5] PEP7 5008207
AT5G11650 Alpha/beta-Hydrolases superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LYG5] 831037
AT5G11920 Beta-fructofuranosidase, insoluble isoenzyme CWINV6 [Source:UniProtKB/Swiss-Prot;Acc:Q8W4S6] CWINV6 831065
AT5G12340 DUF4228 domain protein [Source:UniProtKB/TrEMBL;Acc:Q1PDX4] 831109
AT5G13190 CONTAINS InterPro DOMAIN/s: LPS-induced tumor necrosis factor alpha factor (InterPro:IPR006629); Ha. [Source:TAIR;Acc:AT5G13190] 831158
AT5G14730 At5g14730 [Source:UniProtKB/TrEMBL;Acc:Q9LER3] 831325
AT5G17820 Peroxidase superfamily protein [Source:TAIR;Acc:AT5G17820] 831650
AT5G19240 Uncharacterized GPI-anchored protein At5g19240 [Source:UniProtKB/Swiss-Prot;Acc:Q84VZ5] 832044
AT5G22555 unknown protein; Ha. [Source:TAIR;Acc:AT5G22555] 832318
AT5G22890 Protein SENSITIVE TO PROTON RHIZOTOXICITY 2 [Source:UniProtKB/Swiss-Prot;Acc:Q0WT24] STOP2 832353
AT5G24240 Phosphatidylinositol 4-kinase gamma 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FNF8] PI4KG3 832491
AT5G24530 Protein DOWNY MILDEW RESISTANCE 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLV0] DMR6 832524
AT5G24660 Protein RESPONSE TO LOW SULFUR 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FIR9] LSU2 832538
AT5G25250 Flotillin-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q501E6] FLOT1 832596
AT5G26690 Heavy metal-associated isoprenylated plant protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8GWS3] HIPP02 832720
AT5G27420 E3 ubiquitin-protein ligase ATL31 [Source:UniProtKB/Swiss-Prot;Acc:Q8LGA5] ATL31 832801
AT5G35580 Protein kinase superfamily protein [Source:TAIR;Acc:AT5G35580] 833523
AT5G37485 other RNA [Source:TAIR;Acc:AT5G37485] NA
AT5G37990 Probable S-adenosylmethionine-dependent methyltransferase At5g37990 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKC8] 833778
AT5G38820 833873
AT5G38910 Putative germin-like protein subfamily 1 member 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMB0] 833883
AT5G38930 Germin-like protein subfamily 1 member 10 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMA9] 833885
AT5G39460 Putative F-box protein At5g39460 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLZ1] 833942
AT5G39580 Peroxidase 62 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKA4] PER62 833954
AT5G39630 Vesicle transport v-SNARE family protein [Source:UniProtKB/TrEMBL;Acc:Q1PDQ2] 833959
AT5G41740 Disease resistance protein (TIR-NBS-LRR class) family [Source:UniProtKB/TrEMBL;Acc:F4JYI4] 834177
AT5G41750 Disease resistance protein (TIR-NBS-LRR class) family [Source:UniProtKB/TrEMBL;Acc:Q9LSX5] 834178
AT5G42830 HXXXD-type acyl-transferase family protein [Source:UniProtKB/TrEMBL;Acc:Q9FMN6] 834294
AT5G43520 Cysteine/Histidine-rich C1 domain family protein [Source:UniProtKB/TrEMBL;Acc:Q9FIY8] 834372
AT5G44020 HAD superfamily, subfamily IIIB acid phosphatase [Source:UniProtKB/TrEMBL;Acc:Q9FNC4] 834425
AT5G44380 FAD-binding Berberine family protein [Source:TAIR;Acc:AT5G44380] 834464
AT5G45090 Uncharacterized protein PHLOEM PROTEIN 2-LIKE A7 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHE5] PP2A7 834541
AT5G45110 NPR3 [Source:UniProtKB/TrEMBL;Acc:A0A178UGU4] NPR3 834545
AT5G45220 Disease resistance protein (TIR-NBS-LRR class) family [Source:UniProtKB/TrEMBL;Acc:Q9FKE3] 834558
AT5G45380 DUR3 [Source:UniProtKB/TrEMBL;Acc:A0A178UG75] DUR3 834574
AT5G45490 Probable disease resistance protein At5g45490 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHI7] 834585
AT5G47240 nudix hydrolase homolog 8 [Source:TAIR;Acc:AT5G47240] atnudt8 834771
AT5G47980 BAHD acyltransferase At5g47980 [Source:UniProtKB/Swiss-Prot;Acc:Q9FI40] BAHD1 834849
AT5G48430 At5g48430 [Source:UniProtKB/TrEMBL;Acc:Q9LV70] 834898
AT5G48850 ATSDI1 [Source:UniProtKB/TrEMBL;Acc:A0A178UKA2] SDI1 834943
AT5G50760 At5g50760 [Source:UniProtKB/TrEMBL;Acc:Q9LUE5] 835148
AT5G52350 Exocyst subunit Exo70 family protein [Source:UniProtKB/TrEMBL;Acc:F4KG58] ATEXO70A3 835311
AT5G53250 ATAGP22 [Source:UniProtKB/TrEMBL;Acc:A0A178UC75] AGP22 835406
AT5G53450 Probable plastid-lipid-associated protein 14, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LV04] PAP14 835426
AT5G54710 Ankyrin repeat family protein [Source:TAIR;Acc:AT5G54710] 835560
AT5G57220 Cytochrome P450 81F2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVD6] CYP81F2 835828
AT5G60660 PIP2F [Source:UniProtKB/TrEMBL;Acc:A0A178UG45] PIP2-4 836187
AT5G60780 High affinity nitrate transporter 2.3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJH7] NRT2.3 836199
AT5G60900 receptor-like protein kinase 1 [Source:TAIR;Acc:AT5G60900] RLK1 NA
AT5G61820 Stress up-regulated Nod 19 protein [Source:UniProtKB/TrEMBL;Acc:Q8VZ21] 836304
AT5G64100 Peroxidase [Source:UniProtKB/TrEMBL;Acc:A0A178U798] PER69 836531
AT5G67340 U-box domain-containing protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q5XEZ8] PUB2 836869

 

A work by Océane Cassan

oceane.cassan@supagro.fr